3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04041

Details:

PFam ID : PF04041

PFam Domain Description : Domain of unknown function (DUF377)

Number of Sequence in 50% Dataset : 85

Number of Sequence in Full Dataset : 463

Average sequence length: 284.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04041	D1TWK2_YERPE_1_99	77.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04041	C5CH22_KOSOT_20_344	100

Sequence based PCA Plot of the family - PF04041 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=76 Length=8
Motif2 Start=175 Length=8
Motif3 Start=41 Length=8
Motif4 Start=10 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay