3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04039

Details:

PFam ID : PF04039

PFam Domain Description : Domain related to MnhB subunit of Na+/H+ antiporter

Number of Sequence in 50% Dataset : 81

Number of Sequence in Full Dataset : 623

Average sequence length: 126.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04039	D2RI08_ARCPA_47_108	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04039	A3DM99_STAMF_115_264	99.1

Sequence based PCA Plot of the family - PF04039 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=84 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay