3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04038

Details:

PFam ID : PF04038

PFam Domain Description : Domain of unknown function (DUF381)

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 60

Average sequence length: 59.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04038	D2RI08_ARCPA_47_108	15.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04038	D2RI08_ARCPA_47_108	100

Sequence based PCA Plot of the family - PF04038 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay