3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04037

Details:

PFam ID : PF04037

PFam Domain Description : Domain of unknown function (DUF382)

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 102

Average sequence length: 115.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04037	B5A4G0_GYMST_48_129	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04037	E0SA15_ENCIT_52_182	100

Sequence based PCA Plot of the family - PF04037 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=17
Motif2 Start=50 Length=8
Motif3 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay