3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04034

Details:

PFam ID : PF04034

PFam Domain Description : Domain of unknown function (DUF367)

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 211

Average sequence length: 124.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04034	B0EDN9_ENTDI_45_177	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04034	B0EDN9_ENTDI_45_177	100

Sequence based PCA Plot of the family - PF04034 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=62 Length=8
Motif2 Start=1 Length=8
Motif3 Start=98 Length=11
Motif4 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay