3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04031

Details:

PFam ID : PF04031

PFam Domain Description : Las1-like

Number of Sequence in 50% Dataset : 69

Number of Sequence in Full Dataset : 145

Average sequence length: 146.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04031	E4Y2Z0_OIKDI_5_149	97.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04031	F0VBB0_NEOCA_106_335	100

Sequence based PCA Plot of the family - PF04031 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=34 Length=8
Motif3 Start=113 Length=8
Motif4 Start=139 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay