3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04030

Details:

PFam ID : PF04030

PFam Domain Description : D-arabinono-1,4-lactone oxidase

Number of Sequence in 50% Dataset : 149

Number of Sequence in Full Dataset : 596

Average sequence length: 196.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04030	D2Q104_KRIFD_19_170	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04030	C6MXL4_9GAMM_308_585	100

Sequence based PCA Plot of the family - PF04030 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=229 Length=8
Motif2 Start=2 Length=8
Motif3 Start=264 Length=11
Motif4 Start=40 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay