3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04028

Details:

PFam ID : PF04028

PFam Domain Description : Domain of unknown function (DUF374)

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 220

Average sequence length: 77.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04028	A6DTW5_9BACT_50_141	84

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04028	A6DTW5_9BACT_50_141	100

Sequence based PCA Plot of the family - PF04028 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=45 Length=8
Motif3 Start=27 Length=8
Motif4 Start=83 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay