3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04023

Details:

PFam ID : PF04023

PFam Domain Description : FeoA domain

Number of Sequence in 50% Dataset : 418

Number of Sequence in Full Dataset : 1803

Average sequence length: 72.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04023	B1YA94_THENV_6_32	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04023	B2GGI8_KOCRD_148_255	100

Sequence based PCA Plot of the family - PF04023 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=16 Length=8
Motif2 Start=30 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay