3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04021

Details:

PFam ID : PF04021

PFam Domain Description : Class III signal peptide

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 136

Average sequence length: 27.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04021	B1YA94_THENV_6_32	11.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04021	F0T679_METSL_3_30	77

Sequence based PCA Plot of the family - PF04021 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay