3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04020

Details:

PFam ID : PF04020

PFam Domain Description : Membrane protein of unknown function

Number of Sequence in 50% Dataset : 82

Number of Sequence in Full Dataset : 535

Average sequence length: 109.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04020	B3T4J4_9ZZZZ_210_339	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04020	A9KLN8_CLOPH_1_65	99.6

Sequence based PCA Plot of the family - PF04020 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=42 Length=8
Motif3 Start=19 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay