3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04018

Details:

PFam ID : PF04018

PFam Domain Description : Domain of unknown function (DUF368)

Number of Sequence in 50% Dataset : 81

Number of Sequence in Full Dataset : 377

Average sequence length: 250.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04018	A6DIR1_9BACT_10_309	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04018	A6DIR1_9BACT_10_309	100

Sequence based PCA Plot of the family - PF04018 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=264 Length=14
Motif2 Start=172 Length=8
Motif3 Start=100 Length=11
Motif4 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay