3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04016

Details:

PFam ID : PF04016

PFam Domain Description : Domain of unknown function (DUF364)

Number of Sequence in 50% Dataset : 68

Number of Sequence in Full Dataset : 228

Average sequence length: 129.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04016	A8A8Y9_IGNH4_104_254	83.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04016	Q24YG7_DESHY_119_276	100

Sequence based PCA Plot of the family - PF04016 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=22 Length=8
Motif2 Start=1 Length=8
Motif3 Start=71 Length=8
Motif4 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay