3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04015

Details:

PFam ID : PF04015

PFam Domain Description : Domain of unknown function (DUF362)

Number of Sequence in 50% Dataset : 162

Number of Sequence in Full Dataset : 579

Average sequence length: 219.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04015	E3GXV4_METFV_3_200	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04015	D3L5K2_9BACT_42_338	100

Sequence based PCA Plot of the family - PF04015 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=26 Length=8
Motif3 Start=243 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay