3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04008

Details:

PFam ID : PF04008

PFam Domain Description : Adenosine specific kinase

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 109

Average sequence length: 152.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04008	B0NP81_BACSE_158_288	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04008	E1ZLC3_9CHLO_1_143	100

Sequence based PCA Plot of the family - PF04008 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=38 Length=8
Motif3 Start=17 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay