3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04006

Details:

PFam ID : PF04006

PFam Domain Description : Mpp10 protein

Number of Sequence in 50% Dataset : 112

Number of Sequence in Full Dataset : 243

Average sequence length: 420.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04006	E1Z913_9CHLO_131_820	84.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04006	E4X2S4_OIKDI_1_156	100

Sequence based PCA Plot of the family - PF04006 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=84 Length=8
Motif2 Start=114 Length=8
Motif3 Start=64 Length=8
Motif4 Start=187 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay