3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04005

Details:

PFam ID : PF04005

PFam Domain Description : Hus1-like protein

Number of Sequence in 50% Dataset : 70

Number of Sequence in Full Dataset : 152

Average sequence length: 287.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04005	C0HHK6_MAIZE_1_109	82.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04005	Q5DGF4_SCHJA_1_351	100

Sequence based PCA Plot of the family - PF04005 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=120 Length=8
Motif3 Start=196 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay