3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04004

Details:

PFam ID : PF04004

PFam Domain Description : Leo1-like protein

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 178

Average sequence length: 278.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04004	A7AN98_BABBO_35_265	89.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04004	C1N4H0_MICPC_52_285	100

Sequence based PCA Plot of the family - PF04004 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=58 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay