3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04003

Details:

PFam ID : PF04003

PFam Domain Description : Dip2/Utp12 Family

Number of Sequence in 50% Dataset : 112

Number of Sequence in Full Dataset : 376

Average sequence length: 107.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04003	E6WL87_PANSA_25_104	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04003	Q57UQ2_9TRYP_957_1074	90.9

Sequence based PCA Plot of the family - PF04003 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=40

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay