3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03999

Details:

PFam ID : PF03999

PFam Domain Description : Microtubule associated protein (MAP65/ASE1 family)

Number of Sequence in 50% Dataset : 111

Number of Sequence in Full Dataset : 295

Average sequence length: 447.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03999	D8M4A3_BLAHO_2_148	82.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03999	E3KL14_PUCGT_21_234	100

Sequence based PCA Plot of the family - PF03999 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=382 Length=8
Motif4 Start=371 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay