3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03998

Details:

PFam ID : PF03998

PFam Domain Description : Utp11 protein

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 184

Average sequence length: 223.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03998	B4NPZ3_DROWI_12_249	85.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03998	B0CR94_LACBS_11_333	100

Sequence based PCA Plot of the family - PF03998 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=18
Motif2 Start=4 Length=8
Motif3 Start=51 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay