3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03997

Details:

PFam ID : PF03997

PFam Domain Description : VPS28 protein

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 126

Average sequence length: 176.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03997	A2DSG0_TRIVA_132_279	9.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03997	C5DY03_ZYGRC_22_256	100

Sequence based PCA Plot of the family - PF03997 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=71 Length=8
Motif2 Start=1 Length=8
Motif3 Start=34 Length=8
Motif4 Start=95 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay