3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03994

Details:

PFam ID : PF03994

PFam Domain Description : Domain of Unknown Function (DUF350)

Number of Sequence in 50% Dataset : 91

Number of Sequence in Full Dataset : 525

Average sequence length: 54.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03994	A8S4Y0_9CLOT_10_93	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03994	Y1349_AQUAE_141_194	87

Sequence based PCA Plot of the family - PF03994 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay