3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03993

Details:

PFam ID : PF03993

PFam Domain Description : Domain of Unknown Function (DUF349)

Number of Sequence in 50% Dataset : 165

Number of Sequence in Full Dataset : 876

Average sequence length: 77.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03993	A8S4Y0_9CLOT_10_93	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03993	C3XAC3_OXAFO_440_528	99.8

Sequence based PCA Plot of the family - PF03993 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=36 Length=8
Motif3 Start=66 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay