3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03992

Details:

PFam ID : PF03992

PFam Domain Description : Antibiotic biosynthesis monooxygenase

Number of Sequence in 50% Dataset : 635

Number of Sequence in Full Dataset : 2741

Average sequence length: 76.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03992	A8S4Y0_9CLOT_10_93	94.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03992	D8PF40_9BACT_39_113	99.9

Sequence based PCA Plot of the family - PF03992 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=32 Length=8
Motif4 Start=55 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay