3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03990

Details:

PFam ID : PF03990

PFam Domain Description : Domain of unknown function (DUF348)

Number of Sequence in 50% Dataset : 78

Number of Sequence in Full Dataset : 523

Average sequence length: 42.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03990	A3J6C1_9FLAO_172_226	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03990	A6TJK7_ALKMQ_94_136	100

Sequence based PCA Plot of the family - PF03990 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay