3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03989

Details:

PFam ID : PF03989

PFam Domain Description : DNA gyrase C-terminal domain, beta-propeller

Number of Sequence in 50% Dataset : 217

Number of Sequence in Full Dataset : 7850

Average sequence length: 47.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03989	A3J6C1_9FLAO_172_226	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03989	C1DW89_SULAA_591_685	74

Sequence based PCA Plot of the family - PF03989 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=24 Length=17
Motif2 Start=1 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay