3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03987

Details:

PFam ID : PF03987

PFam Domain Description : Autophagocytosis associated protein, active-site domain

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 197

Average sequence length: 65.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03987	A5DXM7_LODEL_68_145	88.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03987	B9G6Z8_ORYSJ_200_250	99.4

Sequence based PCA Plot of the family - PF03987 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=87 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay