3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03986

Details:

PFam ID : PF03986

PFam Domain Description : Autophagocytosis associated protein (Atg3), N-terminal domain

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 163

Average sequence length: 151.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03986	Q7RFY3_PLAYO_23_94	93.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03986	A8Q722_MALGO_3_185	100

Sequence based PCA Plot of the family - PF03986 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=61 Length=8
Motif4 Start=30 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay