3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03981

Details:

PFam ID : PF03981

PFam Domain Description : Ubiquinol-cytochrome C chaperone

Number of Sequence in 50% Dataset : 78

Number of Sequence in Full Dataset : 278

Average sequence length: 140.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03981	A3YIP1_CAMJE_3_82	46.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03981	B8BR86_THAPS_166_317	82

Sequence based PCA Plot of the family - PF03981 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay