3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03980

Details:

PFam ID : PF03980

PFam Domain Description : Nnf1

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 92

Average sequence length: 106.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03980	A2FJV8_TRIVA_17_148	9.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03980	A5DS56_LODEL_50_184	100

Sequence based PCA Plot of the family - PF03980 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=42 Length=8
Motif4 Start=55 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay