3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03978

Details:

PFam ID : PF03978

PFam Domain Description : Borrelia burgdorferi REV protein

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 14

Average sequence length: 113.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03978	F2JMU3_9FIRM_7_82	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03978	C0RAP5_BORBU_1_61	100

Sequence based PCA Plot of the family - PF03978 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay