3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03977

Details:

PFam ID : PF03977

PFam Domain Description : Na+-transporting oxaloacetate decarboxylase beta subunit

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 307

Average sequence length: 346.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03977	F2JMU3_9FIRM_7_82	65.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03977	F2JMU3_9FIRM_7_82	100

Sequence based PCA Plot of the family - PF03977 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=329 Length=11
Motif2 Start=297 Length=17
Motif3 Start=24 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay