3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03975

Details:

PFam ID : PF03975

PFam Domain Description : CheD chemotactic sensory transduction

Number of Sequence in 50% Dataset : 93

Number of Sequence in Full Dataset : 475

Average sequence length: 112.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03975	E1RBJ2_SPISS_56_184	94.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03975	E1RBJ2_SPISS_56_184	100

Sequence based PCA Plot of the family - PF03975 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=40 Length=8
Motif2 Start=17 Length=8
Motif3 Start=84 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay