3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03974

Details:

PFam ID : PF03974

PFam Domain Description : Ecotin

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 111

Average sequence length: 121.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03974	A8GPG0_RICAH_1_44	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03974	D8FBS8_9DELT_11_66	100

Sequence based PCA Plot of the family - PF03974 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay