3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03973

Details:

PFam ID : PF03973

PFam Domain Description : Triabin

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 211

Average sequence length: 144.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03973	A6YPR2_TRIIF_6_99	82.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03973	A6YPP8_TRIIF_33_210	100

Sequence based PCA Plot of the family - PF03973 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=158 Length=8
Motif3 Start=138 Length=8
Motif4 Start=25 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay