3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03972

Details:

PFam ID : PF03972

PFam Domain Description : MmgE/PrpD family

Number of Sequence in 50% Dataset : 280

Number of Sequence in Full Dataset : 814

Average sequence length: 418.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03972	O52918_CAMJE_2_73	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03972	D3E1X8_METRM_1_473	100

Sequence based PCA Plot of the family - PF03972 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=272 Length=8
Motif2 Start=407 Length=8
Motif3 Start=76 Length=8
Motif4 Start=30 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay