3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03971

Details:

PFam ID : PF03971

PFam Domain Description : Monomeric isocitrate dehydrogenase

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 335

Average sequence length: 683.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03971	O52918_CAMJE_2_73	15.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03971	D2XTX5_9PLAN_1_162	97.6

Sequence based PCA Plot of the family - PF03971 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=4 Length=27
Motif2 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay