3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03969

Details:

PFam ID : PF03969

PFam Domain Description : AFG1-like ATPase

Number of Sequence in 50% Dataset : 152

Number of Sequence in Full Dataset : 926

Average sequence length: 292.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03969	E6ZX11_9BASI_126_575	84.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03969	A0JYW5_ARTS2_23_143	99.8

Sequence based PCA Plot of the family - PF03969 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=88 Length=8
Motif4 Start=106 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay