3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03968

Details:

PFam ID : PF03968

PFam Domain Description : OstA-like protein

Number of Sequence in 50% Dataset : 369

Number of Sequence in Full Dataset : 942

Average sequence length: 117.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03968	B8CYY1_HALOH_39_200	74.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03968	C9P299_VIBME_1_76	100

Sequence based PCA Plot of the family - PF03968 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=8
Motif2 Start=3 Length=8
Motif3 Start=20 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay