3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03966

Details:

PFam ID : PF03966

PFam Domain Description : Trm112p-like protein

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 721

Average sequence length: 58.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03966	A8XJJ0_CAEBR_24_116	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03966	A0LHN5_SYNFM_2_52	99.8

Sequence based PCA Plot of the family - PF03966 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay