3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03962

Details:

PFam ID : PF03962

PFam Domain Description : Mnd1 family

Number of Sequence in 50% Dataset : 64

Number of Sequence in Full Dataset : 137

Average sequence length: 179.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03962	C6H8C6_AJECH_38_107	90.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03962	B6QL47_PENMQ_58_257	100

Sequence based PCA Plot of the family - PF03962 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=12 Length=8
Motif2 Start=54 Length=8
Motif3 Start=260 Length=8
Motif4 Start=230 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay