3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03960

Details:

PFam ID : PF03960

PFam Domain Description : ArsC family

Number of Sequence in 50% Dataset : 101

Number of Sequence in Full Dataset : 1752

Average sequence length: 106.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03960	E3Z9V3_LISIN_1_67	85

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03960	B1RX52_UREUR_5_121	100

Sequence based PCA Plot of the family - PF03960 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=20
Motif2 Start=94 Length=8
Motif3 Start=78 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay