3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03958

Details:

PFam ID : PF03958

PFam Domain Description : Bacterial type II/III secretion system short domain

Number of Sequence in 50% Dataset : 528

Number of Sequence in Full Dataset : 1574

Average sequence length: 86.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03958	C5N284_STAA3_2_43	94.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03958	E5AVH3_BURRH_204_398	99.6

Sequence based PCA Plot of the family - PF03958 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=61 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay