3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03956

Details:

PFam ID : PF03956

PFam Domain Description : Membrane protein of unknown function (DUF340)

Number of Sequence in 50% Dataset : 74

Number of Sequence in Full Dataset : 287

Average sequence length: 162.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03956	D4DSY3_NEIEG_106_225	67.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03956	B2A1A3_NATTJ_114_311	100

Sequence based PCA Plot of the family - PF03956 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=35 Length=8
Motif3 Start=154 Length=11
Motif4 Start=100 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay