3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03955

Details:

PFam ID : PF03955

PFam Domain Description : Adenovirus hexon-associated protein (IX)

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 21

Average sequence length: 100.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03955	Q9W9X3_ADEP3_4_115	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03955	Q9W9X3_ADEP3_4_115	100

Sequence based PCA Plot of the family - PF03955 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=1 Length=8
Motif4 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay