3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03953

Details:

PFam ID : PF03953

PFam Domain Description : Tubulin C-terminal domain

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 802

Average sequence length: 117.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03953	Q2Z1X8_9EUKA_236_369	82.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03953	F0Y3D3_9STRA_290_429	100

Sequence based PCA Plot of the family - PF03953 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=46 Length=20
Motif2 Start=2 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay