3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03952

Details:

PFam ID : PF03952

PFam Domain Description : Enolase, N-terminal domain

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 1497

Average sequence length: 124.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03952	A2FQV9_TRIVA_54_189	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03952	D8LBH0_ECTSI_56_170	99.8

Sequence based PCA Plot of the family - PF03952 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=47 Length=11
Motif2 Start=61 Length=8
Motif3 Start=3 Length=22

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay