3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03951

Details:

PFam ID : PF03951

PFam Domain Description : Glutamine synthetase, beta-Grasp domain

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 1307

Average sequence length: 80.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03951	A1T5I2_MYCVP_33_126	28.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03951	D1ZW73_SORMK_16_63	97.8

Sequence based PCA Plot of the family - PF03951 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=52 Length=8
Motif2 Start=64 Length=8
Motif3 Start=86 Length=8
Motif4 Start=1 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay