3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03949

Details:

PFam ID : PF03949

PFam Domain Description : Malic enzyme, NAD binding domain

Number of Sequence in 50% Dataset : 69

Number of Sequence in Full Dataset : 1684

Average sequence length: 232.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03949	M3R_DICDI_84_295	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03949	D8TBI3_SELML_2_66	100

Sequence based PCA Plot of the family - PF03949 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=63 Length=8
Motif2 Start=46 Length=8
Motif3 Start=1 Length=8
Motif4 Start=20 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay